Distribution illustration for proteomics/lipidomics, etc

A wrapper cleaning the output from Python pipeline (TODO)

Usage

enrichment_rank(
  data,
  formal_name_table,
  id = NULL,
  save_name_col = NULL,
  formal_name_col = NULL,
  sort_policy = "median",
  scale = "raw"
)

Arguments

data

data.frame carries the enrichment

formal_name_table

data.frame, the table including the formal name and save name of the output

id

optional str, the column name in data referring to the subject id, by default the first column of data

save_name_col

optional str, the column name in formal_name, taking the save_name from pipeline output

formal_name_col

optional str, the column name in formal_name, taking the formal name in illustration

sort_policy,

optional str, the sort policy of enrichments, by default "median", "mean" provided

scale,

optional str, the scale of enrichments, by default "raw", "logged" provided as log10(x+1)

Value

a list with two element, "visualization" is a ggplot2 instance as a scatter plot, "data" is the source data