Clean format for a Manhattan plot — manhattan_data

A function cleans column format for a Manhattan plot, in which "phenotype" and "coding" should be factor, "pos" and "p-value" should be numerical, formal name should be character

Usage

manhattan_data_clean(
  data,
  pos,
  phenotype,
  p_value,
  formal_name = NULL,
  coding = NULL,
  phenotype_list = NULL
)

Arguments

data,: data.frame, The table working on
pos,: str, the name of column of position of the variant
phenotype,: str, the name of column of phenotype the variant associated to
p_value,: str, the name of column of p-values
formal_name,: optional str, the name of column of formal name of each variant
coding,: optional str, (currently not used) the name of column of exonic vs intronic,
phenotype_list,: optional vector of str, the list of phenotypes which is put into consideration

Value

data.frame, the table cleaned