Generate and preview a directed acyclic graph for multi-omics result

A wrapper prepare the data for a directed acyclic graph for multi-omics data, and preview it

Usage

multi_omics_directed_acyclic_graph(
  data,
  from,
  to,
  beta,
  p_value,
  from_class,
  to_class,
  class_level = NULL,
  color_palette = NULL
)

Arguments

data

data.frame, the data input

from

str, the column name for the starting point

to

str, the column name for the end point

beta

str, the column name for the beta

p_value,

str, the column name for p-value in the association study

from_class,

str, the column name for the class label of from column if specified

to_class,

str, the column name for the class label of to column if specified

class_level,

optional vector of str, if need to specify a order for classes defined in from_class and to_class

color_palette,

optional vector of str, the color for each class, the package will prepare a default color if not specified.

Value

A list of result with following attributes:

* nodes data.frame, the nodes table * edges data.frame, the edges table * illustration_network visNetwork instance, the network in illustration * raw_network visNetwork instance, the network without any visNetwork::visPhysics settings